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lines changed Original file line number Diff line number Diff line change @@ -385,7 +385,8 @@ assembly completeness. To this end we bundle a script with kat called kat_dista
385385in either a spectra-cn matrix file, or kat histogram file as input, then proceeds to identify peaks
386386and fit distributions to each one. In the case of spectra-cn matrix files it also identifies peaks
387387for each copy number for an assembly. Alternatively, for matrix files generated by KAT GCP, it will also identify
388- peaks associated with GC content.
388+ peaks associated with GC content. Output from this tool consists of stdout logging as well as structured
389+ JSON output. In addition, plots of the fitted distributions can be requested using the *--plot * option.
389390
390391The user can help to get correct predictions out of the tool by providing an approximate frequency for
391392the homozygous part of the distribution. By default, this is assumed to be the last peak. For example,
@@ -401,7 +402,7 @@ might produce the following output for this tetraploid genome:
401402.. image :: images/distanalysis_plot.png
402403 :scale: 100%
403404
404-
405+ As of KAT V2.4.0, this script is executed as a post-processing step to most KAT tools.
405406
406407Finding repetitive regions in assemblies
407408----------------------------------------
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