v0.39 #1082
Open
v0.39 #1082
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #1082 +/- ##
==========================================
- Coverage 81.58% 79.99% -1.60%
==========================================
Files 40 41 +1
Lines 3845 3874 +29
==========================================
- Hits 3137 3099 -38
- Misses 708 775 +67 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
|
Contributor
Benchmark Report
Computer InformationBenchmark Results |
Contributor
|
DynamicPPL.jl documentation for PR #1082 is available at: |
* Fast Log Density Function * Make it work with AD * Optimise performance for identity VarNames * Mark `get_range_and_linked` as having zero derivative * Update comment * make AD testing / benchmarking use FastLDF * Fix tests * Optimise away `make_evaluate_args_and_kwargs` * const func annotation * Disable benchmarks on non-typed-Metadata-VarInfo * Fix `_evaluate!!` correctly to handle submodels * Actually fix submodel evaluate * Document thoroughly and organise code * Support more VarInfos, make it thread-safe (?) * fix bug in parsing ranges from metadata/VNV * Fix get_param_eltype for TSVI * Disable Enzyme benchmark * Don't override _evaluate!!, that breaks ForwardDiff (sometimes) * Move FastLDF to experimental for now * Fix imports, add tests, etc * More test fixes * Fix imports / tests * Remove AbstractFastEvalContext * Changelog and patch bump * Add correctness tests, fix imports * Concretise parameter vector in tests * Add zero-allocation tests * Add Chairmarks as test dep * Disable allocations tests on multi-threaded * Fast InitContext (#1125) * Make InitContext work with OnlyAccsVarInfo * Do not convert NamedTuple to Dict * remove logging * Enable InitFromPrior and InitFromUniform too * Fix `infer_nested_eltype` invocation * Refactor FastLDF to use InitContext * note init breaking change * fix logjac sign * workaround Mooncake segfault * fix changelog too * Fix get_param_eltype for context stacks * Add a test for threaded observe * Export init * Remove dead code * fix transforms for pathological distributions * Tidy up loads of things * fix typed_identity spelling * fix definition order * Improve docstrings * Remove stray comment * export get_param_eltype (unfortunatley) * Add more comment * Update comment * Remove inlines, fix OAVI docstring * Improve docstrings * Simplify InitFromParams constructor * Replace map(identity, x[:]) with [i for i in x[:]] * Simplify implementation for InitContext/OAVI * Add another model to allocation tests Co-authored-by: Markus Hauru <[email protected]> * Revert removal of dist argument (oops) * Format * Update some outdated bits of FastLDF docstring * remove underscores --------- Co-authored-by: Markus Hauru <[email protected]>
* print output * fix * reenable * add more lines to guide the eye * reorder table * print tgrad / trel as well * forgot this type
… and also `bundle_samples` (#1129) * Implement `ParamsWithStats` for `FastLDF` * Add comments * Implement `bundle_samples` for ParamsWithStats -> MCMCChains * Remove redundant comment * don't need Statistics?
* Make FastLDF the default * Add miscellaneous LogDensityProblems tests * Use `init!!` instead of `fast_evaluate!!` * Rename files, rebalance tests
…o` (#1130) * Use OnlyAccsVarInfo for many re-evaluation functions * drop `fast_` prefix * Add a changelog
…nked (#1141) * Improve type stability when all parameters are linked or unlinked * fix a merge conflict * fix enzyme gc crash (locally at least) * Fixes from review
* Make threadsafe evaluation opt-in * Reduce number of type parameters in methods * Make `warned_warn_about_threads_threads_threads_threads` shorter * Improve `setthreadsafe` docstring * warn on bare `@threads` as well * fix merge * Fix performance issues * Use maxthreadid() in TSVI * Move convert_eltype code to threadsafe eval function * Point to new Turing docs page * Add a test for setthreadsafe * Tidy up check_model * Apply suggestions from code review Fix outdated docstrings Co-authored-by: Markus Hauru <[email protected]> * Improve warning message * Export `requires_threadsafe` * Add an actual docstring for `requires_threadsafe` --------- Co-authored-by: Markus Hauru <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is the regular PR for accumulating breaking changes, to be released in the next minor version of DynamicPPL.