|
| 1 | +### v4.0.7+master251112 (2025-11-12) |
| 2 | + |
| 3 | +- color point FC-FC scatter [view](https://github.com/bigomics/omicsplayground/commit/f48d3ce419d470f8d33be6dd62355d4ad2a828b6) |
| 4 | +- fix scatter [view](https://github.com/bigomics/omicsplayground/commit/bf8f745807220e370f0b7241b5ff426fdfe455e9) |
| 5 | +- merge devel into this branch [view](https://github.com/bigomics/omicsplayground/commit/f8117fcac9f84cfe8309c3f26b88e213d8a69884) |
| 6 | +- avoid plotting identical contrasts [view](https://github.com/bigomics/omicsplayground/commit/f59bd92e43f9adcade91270cb193d17f0ea2f57f) |
| 7 | +- align matrices [view](https://github.com/bigomics/omicsplayground/commit/f6c5eee00808df01c759de75ca5a1c29c165a77a) |
| 8 | +- increase axis font size [view](https://github.com/bigomics/omicsplayground/commit/0e3f7bc05c07d53a49bb7977e5986d708739d816) |
| 9 | +- update info button [view](https://github.com/bigomics/omicsplayground/commit/5299504532b6b52a2eec74777b03c6894029f346) |
| 10 | +- changelog [view](https://github.com/bigomics/omicsplayground/commit/4866064c49e4c4a1341dad18c4b0cea44495cf80) |
| 11 | +- fix: control missing MESSAGES [view](https://github.com/bigomics/omicsplayground/commit/d992d8abe8446b7972d8f69c6257df0f2f6c573d) |
| 12 | +- fix: add hardcoded default file (control deploy errors) [view](https://github.com/bigomics/omicsplayground/commit/e3206dc7cb94d5d1a00903e4c60e2745b83232ae) |
| 13 | +- fix: if cookies2 does not exist not crash [view](https://github.com/bigomics/omicsplayground/commit/1091a99b568224a7198f7f4a74566d6e85a4a046) |
| 14 | +- Update version to v4.0.6+devel251029 [view](https://github.com/bigomics/omicsplayground/commit/e089eea58758fff276f1bd4afd7ce08003e737f1) |
| 15 | +- improvement: inform user if custom feature list has no matches [view](https://github.com/bigomics/omicsplayground/commit/df5477dac38e175c1c6a67c7fead4843bfd23d97) |
| 16 | +- fix: genecorr edge case less than 4 features [view](https://github.com/bigomics/omicsplayground/commit/341ff27e86d2c53496d2e9f42b87e1fca3204a7c) |
| 17 | +- Update version to v4.0.6+devel251030 [view](https://github.com/bigomics/omicsplayground/commit/5307dc478e6db19f77b388b75ed45eeb672b5c37) |
| 18 | +- style: remove background box on venn diagrams [view](https://github.com/bigomics/omicsplayground/commit/bdf5c5c3f8014bac743319ee7afbddbfcd1033e4) |
| 19 | +- add scRNAseq example counts and samples [view](https://github.com/bigomics/omicsplayground/commit/e7f1adbf778b92fe4d88bac9e4af9ab93c3a8773) |
| 20 | +- change: make impute true as default [view](https://github.com/bigomics/omicsplayground/commit/83b06185bae8502d1a108af45918161493552b08) |
| 21 | +- Update version to v4.0.6+devel251031 [view](https://github.com/bigomics/omicsplayground/commit/5c803e9fe089308bc978e369d42d67d6810d9ac2) |
| 22 | +- add scRNAseq example contrasts [view](https://github.com/bigomics/omicsplayground/commit/0c35b0c3491ac22da7ac0dd6f203b29ee5031b34) |
| 23 | +- fix: pass NA free X to detectOutlierSamples [view](https://github.com/bigomics/omicsplayground/commit/792ba8871914f7bebea16fb6844cbe2d0be08cf4) |
| 24 | +- enable grouping by database [view](https://github.com/bigomics/omicsplayground/commit/d19300d407a9db67cc5dae2dcb15245c65bcce15) |
| 25 | +- Update version to v4.0.6+devel251103 [view](https://github.com/bigomics/omicsplayground/commit/3c686733a98b424f7b64550c2723d98e50c49e33) |
| 26 | +- fix plot option [view](https://github.com/bigomics/omicsplayground/commit/0ba1c3510f55e0e98a1a76572cf28adb8b7bc8f4) |
| 27 | +- feat: log compute info [view](https://github.com/bigomics/omicsplayground/commit/9098a42bec81e8ae546f963ad09c59f552b8037b) |
| 28 | +- Add installation of plotly package in Dockerfile [view](https://github.com/bigomics/omicsplayground/commit/ab6e6461f2bea2cd19df3510f49dd1972ac65d75) |
| 29 | +- add_check_scrnaseq_datatype [view](https://github.com/bigomics/omicsplayground/commit/440e9d99738456c4dacdf2b44bc4c1e0dd9675a6) |
| 30 | +- fix: recompute code deleted [view](https://github.com/bigomics/omicsplayground/commit/e993de1069ef174e8e66255c82cc3bb086a3501d) |
| 31 | +- Update version to v4.0.6+devel251105 [view](https://github.com/bigomics/omicsplayground/commit/4d602dde3de934529c83362c321f81fa3584d760) |
| 32 | +- fix: dynamically update batch correction methods based on sample size [view](https://github.com/bigomics/omicsplayground/commit/28e7d38319ba2112b29548c3bd1d668f689140a0) |
| 33 | +- Refactor method selection logic for clarity [view](https://github.com/bigomics/omicsplayground/commit/b294baf525dc0921a1dca4ef082a10b400b3480a) |
| 34 | +- Update version to v4.0.6+devel251106 [view](https://github.com/bigomics/omicsplayground/commit/074a5605e7a9c1faccd56450da7d523dc437816b) |
| 35 | +- improve detection and message [view](https://github.com/bigomics/omicsplayground/commit/3dd5af5c273e54087500d243018e955b196de707) |
| 36 | +- Replace scRNAseq example counts, samples, contrasts [view](https://github.com/bigomics/omicsplayground/commit/74e4087da9a4ce16920e214e1740fd9378f53f7f) |
| 37 | +- feat: display gene symbols in selector using labeltype [view](https://github.com/bigomics/omicsplayground/commit/8b66599a8c7cedb1b7e89f12e1158feac2c3b9c3) |
| 38 | +- Update version to v4.0.6+devel251110 [view](https://github.com/bigomics/omicsplayground/commit/66225f7181b06afe783a5a8448ff1f0f436567b7) |
| 39 | +- put on playdata [view](https://github.com/bigomics/omicsplayground/commit/4ef618881984fe6c06c2a3bc98d344781e024cb5) |
| 40 | +- Update version to v4.0.6+devel251111 [view](https://github.com/bigomics/omicsplayground/commit/0a9558fe50366235bec507f9d8d4388fcc89ba34) |
| 41 | +- improve prefix matching [view](https://github.com/bigomics/omicsplayground/commit/8c28c75a3d9532e0f52bd92a14d0003d175585e3) |
| 42 | +- update info [view](https://github.com/bigomics/omicsplayground/commit/71ca17746a30365bdebb7e244798e8627eefca2e) |
| 43 | +- feat: retain common samples on pgx multiomics upload [view](https://github.com/bigomics/omicsplayground/commit/11926cc757e587829adea9f7dc11fd0508228b17) |
| 44 | +- fix normalization for multiomics [view](https://github.com/bigomics/omicsplayground/commit/983ac924cbae617170fce05a54b16c8dbdb67c3c) |
| 45 | +- use new playbase functions [view](https://github.com/bigomics/omicsplayground/commit/69ee2288a7c136469ea8a220cc34848151adc53d) |
| 46 | +- use sub [view](https://github.com/bigomics/omicsplayground/commit/dd9b9239904c45e86867fad2e31d17e939dfe6f0) |
| 47 | +- Update version to v4.0.7+master251112 [view](https://github.com/bigomics/omicsplayground/commit/0caece698da512d08963a72e06e6263a188ca341) |
| 48 | + |
| 49 | + |
1 | 50 | ### v4.0.6+master251028 (2025-10-28) |
2 | 51 |
|
3 | 52 | - changelog [view](https://github.com/bigomics/omicsplayground/commit/f07357fba417e5e20599084b3133bd7bc3fe17f7) |
|
37 | 86 | - Update version to v4.0.6+master251028 [view](https://github.com/bigomics/omicsplayground/commit/e18a72ede2ed64402c39c3e96bb7363d86959a8f) |
38 | 87 |
|
39 | 88 |
|
40 | | -### v4.0.5+master251013 (2025-10-13) |
41 | | - |
42 | | -- make timeseries optional [view](https://github.com/bigomics/omicsplayground/commit/cf02243231750260484bb908da0d5f4c8e2c12ec) |
43 | | -- fix and polishing [view](https://github.com/bigomics/omicsplayground/commit/930d17752bad4f6051fd11d88f1db2a6b0f9d43c) |
44 | | -- improve msg [view](https://github.com/bigomics/omicsplayground/commit/0be5e1fb154852775f928c178a05b547eda1e0ff) |
45 | | -- trigger and show timeseries tab optionally [view](https://github.com/bigomics/omicsplayground/commit/3ea00f4c3e75d62527c807529ba1d380a8b6df84) |
46 | | -- docs: update changelog [view](https://github.com/bigomics/omicsplayground/commit/8e60c026dbeab7243fc23f312b41d2803ef73a65) |
47 | | -- remove impX [view](https://github.com/bigomics/omicsplayground/commit/1599cca40e6104706e9160ae6bac485bc590662d) |
48 | | -- improve [view](https://github.com/bigomics/omicsplayground/commit/7f4570fe75147b58bf80f616fb101a9bf03c9653) |
49 | | -- display timeseries variables [view](https://github.com/bigomics/omicsplayground/commit/bf497d36d9e10b430c3a8eae0cfb7f65de747037) |
50 | | -- clean [view](https://github.com/bigomics/omicsplayground/commit/a9a1060da9952776e2b27a64690c5c3139d6ab8e) |
51 | | -- inform user about time variables and name full contrasts for clarity and transparency [view](https://github.com/bigomics/omicsplayground/commit/94651101f8f74e69820e324dca00ae954f731005) |
52 | | -- feat: remove vert space + hide if too many int_vars [view](https://github.com/bigomics/omicsplayground/commit/84081b832f0fefaaace1d76fc98e08c6fa728b7b) |
53 | | -- ci: version-devel [view](https://github.com/bigomics/omicsplayground/commit/8afd1af7e744a91fba4275dcfceeb31dd392e870) |
54 | | -- ci: version-devel [view](https://github.com/bigomics/omicsplayground/commit/0229290674247763fb0ebde6a3f1110e917c0bf6) |
55 | | -- ci: force devel branch [view](https://github.com/bigomics/omicsplayground/commit/a431e113b274342bff6d82df94c95afa9fd41024) |
56 | | -- ci: force devel branch [view](https://github.com/bigomics/omicsplayground/commit/14b4dab0319bd6ef775ef3cb1f7c73eab47d0cd4) |
57 | | -- Update version to v4.0.4+devel251009 [view](https://github.com/bigomics/omicsplayground/commit/564a5142c477c825568707aac4ff7a26f0eec8a1) |
58 | | -- Update version to v4.0.5+master251013 [view](https://github.com/bigomics/omicsplayground/commit/e6d8a4ac2948558d77d85ddeb4533666ddc52d3a) |
59 | | - |
60 | | - |
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