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Added docs help and cleaning of remove sandbox
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2 files changed

+10
-8
lines changed

2 files changed

+10
-8
lines changed

biobb_godmd/godmd/godmd_prep.py

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -314,9 +314,9 @@ def launch(self):
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self.copy_to_host()
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# remove temporary folder(s)
317-
self.tmp_files.extend([
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self.stage_io_dict.get("unique_dir", "")
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])
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# self.tmp_files.extend([
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# self.stage_io_dict.get("unique_dir", "")
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# ])
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self.remove_tmp_files()
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self.check_arguments(output_files_created=True, raise_exception=False)
@@ -336,6 +336,8 @@ def godmd_prep(input_pdb_orig_path: str, input_pdb_target_path: str,
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output_aln_target_path=output_aln_target_path,
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properties=properties).launch()
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339+
godmd_prep.__doc__ = GOdMDPrep.__doc__
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def main():
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parser = argparse.ArgumentParser(description='Prepares input files for the GOdMD tool.', formatter_class=lambda prog: argparse.RawTextHelpFormatter(prog, width=99999))

biobb_godmd/godmd/godmd_run.py

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -290,11 +290,9 @@ def launch(self):
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self.copy_to_host()
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# remove temporary folder(s)
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self.tmp_files.extend(
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[
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self.stage_io_dict.get("unique_dir", ""),
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]
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)
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# self.tmp_files.extend([
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# self.stage_io_dict.get("unique_dir", ""),
295+
# ])
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self.remove_tmp_files()
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self.check_arguments(output_files_created=True, raise_exception=False)
@@ -331,6 +329,8 @@ def godmd_run(
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properties=properties,
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).launch()
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332+
godmd_run.__doc__ = GOdMDRun.__doc__
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def main():
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parser = argparse.ArgumentParser(

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