gmx genion input ndx + enable group selection

[adamhospital]

gmx genion bb needs a new optional input: input_ndx_path, to be able to use custom groups where to add the ions (e.g. second water shell). Besides, a new property should be included, enabling group selection (now hardcoded to SOL).

[PauAndrio]

input_ndx_path --> Testing

a new property should be included, enabling group selection --> it was already enabled it is called:

properties (dict - Python dictionary object containing the tool parameters, not input/output files) –
replaced_group (str) - (“SOL”) Group of molecules that will be replaced by the solvent.

[github-actions]

This issue is stale because it has been open for 30 days with no activity. If there is no more activity in the following 14 days it will be automatically closed.

[github-actions]

This issue was closed because it has been inactive for 14 days since being marked as stale.

[PauAndrio]

Please, @adamhospital could you check if all the features of this issue have been correctly implemented?

[github-actions]

This issue is stale because it has been open for 30 days with no activity. If there is no more activity in the following 14 days it will be automatically closed.

[github-actions]

This issue is stale because it has been open for 30 days with no activity. If there is no more activity in the following 14 days it will be automatically closed.