Enabling GFA output

[Alan-Mcclus]

Hello Robert,

I am trying to use Raven to assemble a small bacterial genome and i am struggling to get the program to save the GFA file. I realise this is in the help but i can't quite figure out the argument (I'm rather new to this). How would i structure this if my input is:

raven
-t 8
/home/concat.fastq.gz > raven.fasta

Any help is much appreciated.

Alan

[rvaser]

Hi Alan,
you need to run:

raven -t 8 /home/concat.fastq.gz --graphical-fragment-assembly raven.gfa > raven.fasta

Best regards,
Robert

[Alan-Mcclus]

Thanks Robert for the speedy reply. Sorry it has taken so long to get back to you myself

Your help is greatly appreciated.

Alan