Performing co-assembly

[joao1980]

Hi and thanks for the tool.
After reading the documentation it was not clear to me if you can use flye to perform co-assembly of metagenomic samples. I have seevral fastq files I would like to assemble together (coassembly). Is this even possible with flye and if so, how to call the required function?

Thanks in advance for the help!
Best,
Joao

[mikolmogorov]

Hi @joao1980 - yes, you can just mix the samples together and assemble.