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1. To run this code, you need to first download [the model file](https://ftp.ncbi.nlm.nih.gov/pub/lu/PhenoTagger/models.zip) ( it includes the files for three trained models for HPO concept recognition, i.e., CNN, Bioformer, and BioBERT ), then unzip and put the model folder into the Phenotagger folder.
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1. To run this code, you need to first download [the model file](https://ftp.ncbi.nlm.nih.gov/pub/lu/PhenoTagger/models_v1.1.zip) ( it includes the files for three trained models for HPO concept recognition, i.e., CNN, Bioformer, and BioBERT ), then unzip and put the model folder into the Phenotagger folder.
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2. The corpora used in the experiments are provided in */data/corpus.zip*. Please unzip the file, if you need to use them.
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