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Random landmarking incompatible with precomputed affinities

bug

Status: Open.

#172 In KrishnaswamyLab/PHATE;

· aumona opened on Nov 23, 2025

PHATE incompatible with NumPy ≥2.0 despite requirement specifying numpy>=1.16.0

bug

Status: Open.

#169 In KrishnaswamyLab/PHATE;

· nishuang83 opened on Oct 25, 2025

Extract loss function value

enhancement

Status: Open.

#159 In KrishnaswamyLab/PHATE;

· JayaniLakshika opened on Sep 21, 2025

Update unittests

enhancement

Status: Open.

#157 In KrishnaswamyLab/PHATE;

· MattScicluna opened on Sep 8, 2025

memory requirement for large-ish dataset

question

Status: Open.

#155 In KrishnaswamyLab/PHATE;

· yanlingpan opened on May 30, 2025

Cannot import PHATE

Status: Open.

#154 In KrishnaswamyLab/PHATE;

· mmr181 opened on May 22, 2025

Use own KNN

question

Status: Open.

#152 In KrishnaswamyLab/PHATE;

· kvittingseerup opened on Feb 26, 2025

EBdata used for trajectory inference？

question

Status: Open.

#150 In KrishnaswamyLab/PHATE;

· Han-zh210 opened on Dec 27, 2024

Phate using harmony reduction

question

Status: Open.

#149 In KrishnaswamyLab/PHATE;

· wiktormiko opened on Dec 23, 2024

How does PHATE handle new data?

question

Status: Open.

#147 In KrishnaswamyLab/PHATE;

· Mr-Byun opened on Nov 9, 2024

What is happening in mds.method = "classic"?

question

Status: Open.

#145 In KrishnaswamyLab/PHATE;

· JayaniLakshika opened on Sep 6, 2024

Providing init to the phateR implementation only saves up time if only the parameter t is changing but not other parameters?

question

Status: Open.

#143 In KrishnaswamyLab/PHATE;

· erzakiev opened on Apr 16, 2024