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@ivokwee ivokwee commented Apr 29, 2025

Sub-issue of issue #1372 : Geneset table not showing genesets

Issue: code is still matching on human ortholog (perhaps old way). In newer pgx, seneset are by organism's native symbols.

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ivokwee commented Apr 29, 2025

Confirmed. Screenshot before fix:
image

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ivokwee commented Apr 29, 2025

Will be fixed in master (need to upmerge to devel).

Solution: match best column (symbol or ortholog) to GMT matrix. Older pgx may have GMT as human ortholog, newer pgx should use native symbol

image

@ivokwee ivokwee requested a review from ESCRI11 April 29, 2025 12:47
@ivokwee ivokwee marked this pull request as ready for review April 29, 2025 12:47
@ivokwee ivokwee merged commit cfdb7df into master Apr 29, 2025
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@ESCRI11 ESCRI11 deleted the fix-3172-gsettable branch April 29, 2025 13:15
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3 participants