Fix multiomics normalization at upload #1621
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ivokwee
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Nov 11, 2025
| if (min(counts, na.rm = TRUE) == 0 || any(is.na(counts))) { | ||
| prior0 <- min(counts[counts > 0], na.rm = TRUE) | ||
| X <- counts | ||
| dtypes <- unique(unlist(lapply(rownames(counts), function(x) strsplit(x, ":")[[1]][1]))) |
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unique(sub(":.*","",rownames(counts))
ivokwee
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Nov 11, 2025
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Fix multi-omics normalization.
logCPM always for gx;
Max Median always for non-gx data.
Depends on bigomics/playbase#354