sivirep 1.0.2

sivirep 1.0.2

This patch release includes the following improvements and fixes:

• Updated and added new lintr validations to ensure consistent code quality.

• Fixed pattern matching in import_data_event function and validations;
  added a reference to list_events in the documentation.

• Added a handler on Report template skeleton to display warning or errors
  from import_data_event and geo_filtro functions during report rendering,
  based on input parameters.

• Added a reference to the Analisis Personalizados article in REAMDE file
  and Getting Started guide.

• Included a note highlighting the requirement of an Internet connection on
  the firs use in all functions that import or download data.

• Created English-language articles introducing to Custom Analysis workflow
  and an overview of sivirep package.

• Added warning messages in geo_filtro when there is no data for a specific
  municipality or department, and included a reference to import_geo_cods.

sivirep 1.0.1

sivirep 1.0.1

This patch release fixes the following items::

• es_ES was replaced with es-ES in the DESCRIPTION file.

• Updated function examples that require data import and
  use the cache parameter with if (interactive()) to prevent an increase in the package's size
  on CRAN.

• Rename the report template Reporte Basico to Reporte Evento and update the documentation.

sivirep 1.0.0

This major release introduces a variety of significant new features and addresses bugs identified in previous versions of the package. The updates are based on usability testing and the expert review process conducted with Colombia's National Institute of Health.

New features

Incidence:

Set of functions to import, group, and plot the incidence calculations of a specific disease or event for Colombia, departments, or municipalities

• import_pob_incidencia()
• import_pob_proyecciones()
• import_pob_riesgo()
• calcular_incidencia()
• calcular_incidencia_geo()
• calcular_incidencia_sex()
• plot_tabla_incidencia_geo()
• plot_tabla_incidencia_sex()

Ethnicity

Functions to generated the cases distribution, and plot of the ethnicity groups related to a specific disease or event

• agrupar_per_etn()
• plot_per_etn()

Intial classification of cases

Functions to group, and plot the initial classification of cases

• agrupar_tipo_caso()
• plot_tipo_caso()
• plot_tipo_caso_years()

Years (restrospective)

Functions to generate the distribution of cases, and plot across multiple years

• agrupar_years()
• plot_years()

Events

Functions to generate the distribution of cases by event type

• agrupar_events()
• plot_tabla_tipos_event()

Geographic Area

Functions to generate and plot the distribution of cases by geographic area, including top departments or municipalities.

• agrupar_area_geo()
• agrupar_top_area_geo()
• plot_area_geo
• plot_top_area_geo

Report template:

The report template Reporte Evento now includes five new sections called:

• Distribución de casos
• Distribución de casos por clasificación
• Distribución por área geográfica
• Distribución por pertenencia étnica
• Incidencia