feat: add Galaxy tool execution integration demo #894
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Creates the base infrastructure layer for BRC Analytics backend: - FastAPI application with health and cache endpoints - Redis caching service with TTL management - Docker Compose setup (backend + redis + nginx) - nginx reverse proxy configuration - uv for dependency management - Ruff formatting for Python code - E2E health check tests This branch serves as the foundation for feature branches to build upon.
Adds GET /api/v1/version endpoint that returns: - API version (from APP_VERSION env var) - Environment (development/production) - Service name This provides a simple way for the frontend to display version info and demonstrates the backend infrastructure is working.
Use APP_VERSION build arg to inject version from package.json into backend container. Adds docker-build.sh script to automate this. All endpoints now use settings.APP_VERSION instead of hardcoded values.
builds on backend-infrastructure to add: - galaxy api integration via bioblend - job submission and monitoring capabilities - workflow execution - job history tracking - results retrieval - frontend galaxy ui (galaxyjob components, galaxyjobview) - react hooks for galaxy functionality - e2e test coverage for galaxy integration - galaxy configuration settings (api url, api key, tool ids) - bioblend dependency for galaxy communication this feature can be independently reviewed and tested
- Update README to describe Galaxy integration only (not LLM/ENA) - Sync .gitignore from infrastructure branch
dannon
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Galaxy job submission and monitoring infrastructure. Requires the backend, currently just a demo random_lines tool, but this is where&how we will execute logansearch, lexicmap, etc., in the future for use from BRC without even visiting galaxy.
Summary
Depends on: #892