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@theislab

Theis Lab

Institute of Computational Biology

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.1k 241

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 473 112

  3. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 408 51

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 392 65

  5. scib scib Public

    Benchmarking analysis of data integration tools

    Python 393 73

  6. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 315 38

Repositories

Showing 10 of 244 repositories
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 315 Apache-2.0 38 35 (1 issue needs help) 2 Updated Nov 21, 2025
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 56 BSD-3-Clause 5 8 10 Updated Nov 21, 2025
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Nov 21, 2025
  • archmap Public
    theislab/archmap’s past year of commit activity
    JavaScript 4 MIT 0 3 0 Updated Nov 21, 2025
  • archmap_data Public
    theislab/archmap_data’s past year of commit activity
    Python 1 0 1 1 Updated Nov 21, 2025
  • moscot Public

    Multi-omic single-cell optimal transport tools

    theislab/moscot’s past year of commit activity
    Python 178 BSD-3-Clause 12 31 6 Updated Nov 20, 2025
  • CellFlow2 Public Forked from theislab/CellFlow

    Modeling complex perturbations with CellFlow

    theislab/CellFlow2’s past year of commit activity
    Python 3 16 0 0 Updated Nov 20, 2025
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 13 MIT 2 0 0 Updated Nov 18, 2025
  • archmap_doc Public
    theislab/archmap_doc’s past year of commit activity
    Python 0 0 0 0 Updated Nov 18, 2025
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri’s past year of commit activity
    Python 142 GPL-3.0 19 13 0 Updated Nov 18, 2025
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