Update pre-commit hooks to latest versions

[Copilot]

What does this PR do?

Updates all pre-commit hook dependencies to their latest stable versions and adjusts configuration for compatibility.

Hook version updates:

• pre-commit/pre-commit-hooks: v4.5.0 → v6.0.0
• codespell: v2.2.6 → v2.4.1
• black: 23.12.1 → 25.11.0
• mdformat: 0.7.17 → 0.7.22 (pinned to 0.7.x - mdformat 1.0.0 incompatible with mdformat_frontmatter)
• ruff: v0.1.9 → v0.14.5

Configuration changes:

• Added exclude: '\.ipynb$' to ruff hook to prevent false positives in test notebooks (which intentionally contain broken code)

Code fixes from updated hooks:

• Fixed typo: "simulatin" → "simulating" in test_execute.py
• Split long f-string in engines.py to meet 120 char limit
• Applied black/mdformat formatting to various files

Fixes #<issue_number>

Warning

Firewall rules blocked me from connecting to one or more addresses (expand for details)

I tried to connect to the following addresses, but was blocked by firewall rules:

• https://api.github.com/repos/executablebooks/mdformat/tags
  • Triggering command: curl -s REDACTED (http block)

If you need me to access, download, or install something from one of these locations, you can either:

• Configure Actions setup steps to set up my environment, which run before the firewall is enabled
• Add the appropriate URLs or hosts to the custom allowlist in this repository's Copilot coding agent settings (admins only)

Original prompt

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This section details on the original issue you should resolve

<issue_title>Chore: update the precommit config</issue_title>
<issue_description>Update the dependencies and config settings.</issue_description>

Comments on the Issue (you are @copilot in this section)

• Fixes Chore: update the precommit config #834

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[willingc]

Superceded by #843

[Borda]

Superceded by #843

What is different in the newer one?