Update precommit config

.pre-commit-config.yaml

@@ -2,11 +2,13 @@ ci:
   autofix_prs: true
   autoupdate_commit_msg: '[pre-commit.ci] pre-commit suggestions'
   autoupdate_schedule: quarterly
-  # submodules: true
+
+# exclude notebook files and markdown issue templates
+exclude: '\.ipynb$|^\.github/'
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v6.0.0
     hooks:
       - id: end-of-file-fixer
       - id: trailing-whitespace
@@ -18,35 +20,30 @@ repos:
       - id: check-docstring-first
       - id: detect-private-key
 
-  #- repo: https://github.com/myint/docformatter
-  #  rev: v1.5.0
-  #  hooks:
-  #    - id: docformatter
-  #      args: [--in-place, --wrap-summaries=120, --wrap-descriptions=120]
-
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+    rev: v2.4.1
     hooks:
       - id: codespell
         additional_dependencies: [tomli]
-        #args: ["--write-changes"] # uncomment if you want to get automatic fixing
 
   - repo: https://github.com/psf/black
-    rev: 23.12.1
+    rev: 25.11.0
     hooks:
       - id: black
         name: Black code
+        args: [--skip-string-normalization]
 
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.17
+    rev: 1.0.0
     hooks:
       - id: mdformat
         additional_dependencies:
           - mdformat-gfm
-          - mdformat_frontmatter
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.9
+    rev: v0.14.5
     hooks:
-        - id: ruff
-          args: ["--fix"]
+      # Run the linter.
+      - id: ruff-check
+      # Run the formatter.
+      - id: ruff-format

CONTRIBUTING.md

@@ -149,6 +149,6 @@ _Note: You might want to set a reference to the main repository to fetch/merge f
 git remote add upstream https://github.com/nteract/papermill
 ```
 
-It's possible you will have conflicts between your repository and main. Here, `main` is meant to be synchronized with the `upstream` repository.  GitHub has some good [documentation](https://help.github.com/articles/resolving-a-merge-conflict-using-the-command-line/) on merging pull requests from the command line.
+It's possible you will have conflicts between your repository and main. Here, `main` is meant to be synchronized with the `upstream` repository. GitHub has some good [documentation](https://help.github.com/articles/resolving-a-merge-conflict-using-the-command-line/) on merging pull requests from the command line.
 
 Happy hacking on Papermill!

README.md

@@ -47,7 +47,7 @@ pip install papermill
 ```
 
 For all optional io dependencies, you can specify individual bundles
-like `s3`, or `azure` -- or use `all`. To use Black to format parameters you can add as an extra requires \['black'\].
+like `s3`, or `azure` -- or use `all`. To use Black to format parameters you can add as an extra requires ['black'].
 
 ```{.sourceCode .bash}
 pip install papermill[all]
@@ -100,7 +100,7 @@ $ papermill local/input.ipynb s3://bkt/output.ipynb -p alpha 0.6 -p l1_ratio 0.1
 ```
 
 **NOTE:**
-If you use multiple AWS accounts, and you have [properly configured your AWS  credentials](https://boto3.amazonaws.com/v1/documentation/api/latest/guide/configuration.html), then you can specify which account to use by setting the `AWS_PROFILE` environment variable at the command-line. For example:
+If you use multiple AWS accounts, and you have [properly configured your AWS credentials](https://boto3.amazonaws.com/v1/documentation/api/latest/guide/configuration.html), then you can specify which account to use by setting the `AWS_PROFILE` environment variable at the command-line. For example:
 
 ```{.sourceCode .bash}
 $ AWS_PROFILE=dev_account papermill local/input.ipynb s3://bkt/output.ipynb -p alpha 0.6 -p l1_ratio 0.1
@@ -154,7 +154,7 @@ Papermill supports the following name handlers for input and output paths during
 
 - Local file system: `local`
 
-- HTTP, HTTPS protocol:  `http://, https://`
+- HTTP, HTTPS protocol: `http://, https://`
 
 - Amazon Web Services: [AWS S3](https://aws.amazon.com/s3/) `s3://`
 

docs/changelog.md

@@ -188,8 +188,8 @@ We made it to our [1.0 milestone goals](https://github.com/nteract/papermill/mil
 
 - Input and output paths can now reference input parameters. `my_nb_{nb_type}.ipynb out_{nb_type}.ipynb -p nb_type test` will substitute values into the paths passed in with python format application patterns.
 - `read_notebook`, `read_notebooks`, `record`, and `display` api functions are now removed.
-- \[upstream\] ipywidgets are now supported. See [nbconvert docs](https://nbconvert.readthedocs.io/en/latest/execute_api.html#widget-state) for details.
-- \[upstream\] notebook executions which run out of memory no longer hang indefinitely when the kernel dies.
+- [upstream] ipywidgets are now supported. See [nbconvert docs](https://nbconvert.readthedocs.io/en/latest/execute_api.html#widget-state) for details.
+- [upstream] notebook executions which run out of memory no longer hang indefinitely when the kernel dies.
 
 ## 0.19.1
 

papermill/abs.py

@@ -1,4 +1,5 @@
 """Utilities for working with Azure blob storage"""
+
 import io
 import re
 

papermill/adl.py

@@ -1,4 +1,5 @@
 """Utilities for working with Azure data lake storage"""
+
 import re
 
 from azure.datalake.store import core, lib

papermill/engines.py

@@ -1,4 +1,5 @@
 """Engines to perform different roles"""
+
 import datetime
 import sys
 from functools import wraps

papermill/inspection.py

@@ -1,4 +1,5 @@
 """Deduce parameters of a notebook from the parameters cell."""
+
 from pathlib import Path
 
 import click
@@ -88,9 +89,7 @@ def display_notebook_help(ctx, notebook_path, parameters):
                 param_help = f"{definition:<34}{p['help']}"
             click.echo(param_help)
     else:
-        click.echo(
-            "\n  Can't infer anything about this notebook's parameters. " "It may not have any parameter defined."
-        )
+        click.echo("\n  Can't infer anything about this notebook's parameters. It may not have any parameter defined.")
 
     return 0
 

papermill/log.py

@@ -1,4 +1,5 @@
 """Sets up a logger"""
+
 import logging
 
 logger = logging.getLogger('papermill')

papermill/models.py

@@ -1,4 +1,5 @@
 """Models used by papermill."""
+
 from collections import namedtuple
 
 Parameter = namedtuple(

papermill/tests/test_cli.py

@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-""" Test the command line interface """
+"""Test the command line interface"""
 
 import os
 import subprocess

papermill/tests/test_execute.py

@@ -136,7 +136,7 @@ def test(self):
         path = get_notebook_path('broken1.ipynb')
 
         # check that the notebook has two existing marker cells, so that this test is sure to be
-        # validating the removal logic (the markers are simulatin an error in the first code cell
+        # validating the removal logic (the markers are simulating an error in the first code cell
         # that has since been fixed)
         original_nb = load_notebook_node(path)
         self.assertEqual(original_nb.cells[0].metadata["tags"], ["papermill-error-cell-tag"])

pyproject.toml

@@ -3,7 +3,7 @@
 # Example configuration for Black.
 [tool.black]
 line-length = 120
-target-version = ['py311']
+target-version = ['py310']
 skip-string-normalization = true
 
 
@@ -34,33 +34,27 @@ ignore-words-list = "dne, compiletime"
 
 
 [tool.ruff]
-target-version = "py38"
+target-version = "py310"
 line-length = 120
 # Enable Pyflakes `E` and `F` codes by default.
-select = [
+lint.select = [
     "E", "W",  # see: https://pypi.org/project/pycodestyle
     "F",  # see: https://pypi.org/project/pyflakes
     "I",  # isort
-#    "D",  # see: https://pypi.org/project/pydocstyle
-#    "N",  # see: https://pypi.org/project/pep8-naming
     "RUF100",  # unnecessary noqa comment
     "UP",  # pyupgrade
 ]
-#extend-select = [
-#    "C4",  # see: https://pypi.org/project/flake8-comprehensions
-#    "SIM",  # see: https://pypi.org/project/flake8-simplify
-#    "RET",  # see: https://pypi.org/project/flake8-return
-#    "PT",  # see: https://pypi.org/project/flake8-pytest-style
-#]
-ignore = [
+lint.ignore = [
     "E731",  # Do not assign a lambda expression, use a def
+    "Q",      # Ignore quotes
+    "UP032"  # Ignore Use f-string instead of `format` call
 ]
 # Exclude a variety of commonly ignored directories.
 exclude = [
     "docs"
 ]
-ignore-init-module-imports = true
+format.quote-style = "preserve"
 
-[tool.ruff.pydocstyle]
+[tool.ruff.lint.pydocstyle]
 # Use Google-style docstrings.
 convention = "google"

setup.py

@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-""""
+"""
 setup.py
 
 See:
@@ -8,6 +8,7 @@
 https://github.com/pypa/sampleproject
 
 """
+
 import os
 
 from setuptools import setup